---
title: "Inspect local protein-structure metadata"
output: html_document
params:
  pdb: "synthetic_ca_fixture.pdb"
---

The bundled PDB is a constructed parser fixture, not an experimental structure or AlphaFold prediction. Offline inspection reports the file's B-factor values and does not infer their provenance. Only the explicit API retrieval route in the tutorial marks a file as an AlphaFold DB result and interprets its B-factor field as pLDDT.

```{r setup, message=FALSE}
source("inspect_alphafold.R")
prefix <- tempfile("structure-review-")
result <- inspect_pdb(params$pdb, prefix)
```

## File summary

```{r summary}
knitr::kable(result$summary)
```

## Per-residue values

```{r residues}
knitr::kable(result$residues)
```

The summary is a quality-inspection aid only. It does not validate geometry, domain orientation, function, binding, stability, or experimental accuracy.