R version 4.3.3 (2024-02-29) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 24.04.4 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.12.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 locale: [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C time zone: Europe/Paris tzcode source: system (glibc) attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] deldir_2.0-4 pbapply_1.7-2 gridExtra_2.3 [4] rlang_1.1.3 magrittr_2.0.3 RcppAnnoy_0.0.22 [7] matrixStats_1.2.0 ggridges_0.5.6 compiler_4.3.3 [10] spatstat.geom_3.2-8 png_0.1-8 vctrs_0.6.5 [13] reshape2_1.4.4 stringr_1.5.1 pkgconfig_2.0.3 [16] fastmap_1.1.1 ellipsis_0.3.2 labeling_0.4.3 [19] utf8_1.2.4 promises_1.2.1 purrr_1.0.2 [22] jsonlite_1.8.8 goftest_1.2-3 later_1.3.2 [25] spatstat.utils_3.0-4 irlba_2.3.5.1 parallel_4.3.3 [28] cluster_2.1.6 R6_2.5.1 ica_1.0-3 [31] stringi_1.8.3 RColorBrewer_1.1-3 spatstat.data_3.0-4 [34] reticulate_1.35.0 parallelly_1.37.1 lmtest_0.9-40 [37] scattermore_1.2 Rcpp_1.0.12 tensor_1.5 [40] future.apply_1.11.1 zoo_1.8-12 sctransform_0.4.1 [43] httpuv_1.6.14 Matrix_1.6-5 splines_4.3.3 [46] igraph_1.6.0 tidyselect_1.2.0 abind_1.4-5 [49] spatstat.random_3.2-2 codetools_0.2-19 miniUI_0.1.1.1 [52] spatstat.explore_3.2-5 listenv_0.9.1 lattice_0.22-5 [55] tibble_3.2.1 plyr_1.8.9 withr_2.5.0 [58] shiny_1.8.0 ROCR_1.0-11 Rtsne_0.17 [61] future_1.33.1 fastDummies_1.7.3 survival_3.5-8 [64] polyclip_1.10-6 fitdistrplus_1.1-11 pillar_1.9.0 [67] Seurat_5.0.1 KernSmooth_2.23-22 plotly_4.10.4 [70] generics_0.1.3 RcppHNSW_0.5.0 sp_2.1-2 [73] ggplot2_3.4.4 munsell_0.5.0 scales_1.3.0 [76] globals_0.16.2 xtable_1.8-4 glue_1.7.0 [79] lazyeval_0.2.2 tools_4.3.3 data.table_1.14.10 [82] RSpectra_0.16-1 RANN_2.6.1 leiden_0.4.3.1 [85] dotCall64_1.1-1 cowplot_1.1.3 grid_4.3.3 [88] tidyr_1.3.1 colorspace_2.1-0 nlme_3.1-164 [91] patchwork_1.2.0 cli_3.6.2 spatstat.sparse_3.0-3 [94] spam_2.10-0 fansi_1.0.5 viridisLite_0.4.2 [97] dplyr_1.1.4 uwot_0.1.16 gtable_0.3.4 [100] digest_0.6.34 progressr_0.14.0 ggrepel_0.9.5 [103] farver_2.1.1 htmlwidgets_1.6.4 SeuratObject_5.0.1 [106] htmltools_0.5.7 lifecycle_1.0.4 httr_1.4.7 [109] mime_0.12 MASS_7.3-60.0.1